taxize - Taxonomic Information from Around the Web
Interacts with a suite of web 'APIs' for taxonomic tasks, such as getting database specific taxonomic identifiers, verifying species names, getting taxonomic hierarchies, fetching downstream and upstream taxonomic names, getting taxonomic synonyms, converting scientific to common names and vice versa, and more.
Last updated 12 days ago
taxonomybiologynomenclaturejsonapiwebapi-clientidentifiersspeciesnamesapi-wrapperbiodiversitydarwincoredatataxize
265 stars 7.26 score 120 dependencies 28 dependentsmetacoder - Tools for Parsing, Manipulating, and Graphing Taxonomic Abundance Data
A set of tools for parsing, manipulating, and graphing data classified by a hierarchy (e.g. a taxonomy).
Last updated 7 months ago
community-diversityhierarchicalmetabarcodingpcrtaxonomytrees
134 stars 5.71 score 142 dependencieswikitaxa - Taxonomic Information from 'Wikipedia'
'Taxonomic' information from 'Wikipedia', 'Wikicommons', 'Wikispecies', and 'Wikidata'. Functions included for getting taxonomic information from each of the sources just listed, as well performing taxonomic search.
Last updated 2 years ago
taxonomyspeciesapiweb-serviceswikipediavernacularwikispecieswikicommonstaxizewikipedia-api
21 stars 4.49 score 99 dependencies 32 dependentstaxa - Classes for Storing and Manipulating Taxonomic Data
Provides classes for storing and manipulating taxonomic data. Most of the classes can be treated like base R vectors (e.g. can be used in tables as columns and can be named). Vectorized classes can store taxon names and authorities, taxon IDs from databases, taxon ranks, and other types of information. More complex classes are provided to store taxonomic trees and user-defined data associated with them.
Last updated 7 months ago
taxonomybiologyhierarchydata-cleaningtaxon
48 stars 3.37 score 20 dependencies