taxize - Taxonomic Information from Around the Web

Interacts with a suite of web 'APIs' for taxonomic tasks, such as getting database specific taxonomic identifiers, verifying species names, getting taxonomic hierarchies, fetching downstream and upstream taxonomic names, getting taxonomic synonyms, converting scientific to common names and vice versa, and more.

Last updated 14 days ago

taxonomybiologynomenclaturejsonapiwebapi-clientidentifiersspeciesnamesapi-wrapperbiodiversitydarwincoredatataxize

12.83 score 269 stars 24 packages 1.6k scripts 1.5k downloads

metacoder - Tools for Parsing, Manipulating, and Graphing Taxonomic Abundance Data

A set of tools for parsing, manipulating, and graphing data classified by a hierarchy (e.g. a taxonomy).

Last updated 9 months ago

community-diversityhierarchicalmetabarcodingpcrtaxonomytrees

9.17 score 136 stars 314 scripts 204 downloads

wikitaxa - Taxonomic Information from 'Wikipedia'

'Taxonomic' information from 'Wikipedia', 'Wikicommons', 'Wikispecies', and 'Wikidata'. Functions included for getting taxonomic information from each of the sources just listed, as well performing taxonomic search.

Last updated 1 months ago

taxonomyspeciesapiweb-serviceswikipediavernacularwikispecieswikicommonstaxizewikipedia-api

7.52 score 21 stars 25 packages 11 scripts 1.3k downloads

taxa - Classes for Storing and Manipulating Taxonomic Data

Provides classes for storing and manipulating taxonomic data. Most of the classes can be treated like base R vectors (e.g. can be used in tables as columns and can be named). Vectorized classes can store taxon names and authorities, taxon IDs from databases, taxon ranks, and other types of information. More complex classes are provided to store taxonomic trees and user-defined data associated with them.

Last updated 9 months ago

taxonomybiologyhierarchydata-cleaningtaxon

6.79 score 48 stars 216 scripts 407 downloads